Biochemical Systems Analysis

Biochemical Systems Analysis
Author: Michael A. Savageau
Publisher: Addison Wesley Publishing Company
Total Pages: 404
Release: 1976
Genre: Science
ISBN:

Stochastic Analysis of Biochemical Systems

Stochastic Analysis of Biochemical Systems
Author: David F. Anderson
Publisher: Springer
Total Pages: 91
Release: 2015-04-23
Genre: Mathematics
ISBN: 3319168959

This book focuses on counting processes and continuous-time Markov chains motivated by examples and applications drawn from chemical networks in systems biology. The book should serve well as a supplement for courses in probability and stochastic processes. While the material is presented in a manner most suitable for students who have studied stochastic processes up to and including martingales in continuous time, much of the necessary background material is summarized in the Appendix. Students and Researchers with a solid understanding of calculus, differential equations and elementary probability and who are well-motivated by the applications will find this book of interest. David F. Anderson is Associate Professor in the Department of Mathematics at the University of Wisconsin and Thomas G. Kurtz is Emeritus Professor in the Departments of Mathematics and Statistics at that university. Their research is focused on probability and stochastic processes with applications in biology and other areas of science and technology. These notes are based in part on lectures given by Professor Anderson at the University of Wisconsin – Madison and by Professor Kurtz at Goethe University Frankfurt.

Computational Analysis of Biochemical Systems

Computational Analysis of Biochemical Systems
Author: Eberhard O. Voit
Publisher: Cambridge University Press
Total Pages: 556
Release: 2000-09-04
Genre: Medical
ISBN: 9780521785792

Teaches the use of modern computational methods for the analysis of biomedical systems using case studies and accompanying software.

Numerical Simulation and Modelling of Electronic and Biochemical Systems

Numerical Simulation and Modelling of Electronic and Biochemical Systems
Author: Jaijeet Roychowdhury
Publisher: Now Publishers Inc
Total Pages: 222
Release: 2009
Genre: Computers
ISBN: 1601983042

Numerical simulation and modelling have been growing in importance and seeing steadily increasing practical application. The proliferation of applications and physical domains for which simulation technologies are now needed, compounded by generally increased complexity, has expanded the scope of numerical simulation and modelling within CAD and spurred new research directions. Numerical Simulation and Modelling of Electronic and Biochemical Systems provides an introduction to the fundamentals of numerical simulation, and to the basics of modelling electronic circuits and biochemical reactions. The emphasis is on capturing a minimal set of important concepts succinctly, but concretely enough that the reader will be left with an adequate foundation for further independent exploration. Starting from mathematical models of basic electronic elements, circuits are modelled as nonlinear differential-algebraic equation (DAE) systems. Two basic techniques - quiescent steady state and transient - for solving these differential equations systems are then developed. It is then shown how biochemical reactions can also be modelled deterministically as DAEs. Following this, frequency domain techniques for finding sinusoidal steady states of linear DAEs are developed, as are direct and adjoint techniques for computing parameter sensitivities and the effects of stationary random noise. For readers interested in a glimpse of topics beyond these basics, an introduction to nonlinear periodic steady state methods (harmonic balance and shooting) and the multitime partial differential equation formulation is provided. Also provided is an overview of model order reduction, an important topic of current research that has roots in numerical simulation algorithms. Finally, sample applications of nonlinear oscillator macromodels - in circuits (PLLs), biochemical reaction-diffusion systems and nanoelectronics - are presented.

Biochemical Systems Analysis

Biochemical Systems Analysis
Author: Michael A. Savageau
Publisher: Addison Wesley Publishing Company
Total Pages: 408
Release: 1976
Genre: Science
ISBN:

Information Processing by Biochemical Systems

Information Processing by Biochemical Systems
Author: Orna Filo
Publisher: John Wiley & Sons
Total Pages: 168
Release: 2010-01-05
Genre: Computers
ISBN: 0470552670

A Research-Driven Resource on Building Biochemical Systems to Perform Information Processing Functions Information Processing by Biochemical Systems describes fully delineated biochemical systems, organized as neural network–type assemblies. It explains the relationship between these two apparently unrelated fields, revealing how biochemical systems have the advantage of using the "language" of the physiological processes and, therefore, can be organized into the neural network–type assemblies, much in the way that natural biosystems are. A wealth of information is included concerning both the experimental aspects (such as materials and equipment used) and the computational procedures involved. This authoritative reference: Addresses network-type connectivity, considered to be a key feature underlying the information processing ability of the brain Describes novel scientific achievements, and serves as an aid for those interested in further developing biochemical systems that will perform information-processing functions Provides a viable approach for furthering progress in the area of molecular electronics and biocomputing Includes results obtained in experimental studies involving a variety of real enzyme systems Information Processing by Biochemical Systems is intended for graduate students and professionals, as well as biotechnologists.

Data Analysis in Biochemistry and Biophysics

Data Analysis in Biochemistry and Biophysics
Author: Magar Mager
Publisher: Elsevier
Total Pages: 516
Release: 2012-12-02
Genre: Science
ISBN: 0323147380

Data Analysis in Biochemistry and Biophysics describes the techniques how to derive the most amount of quantitative and statistical information from data gathered in enzyme kinetics, protein-ligand equilibria, optical rotatory dispersion, chemical relaxation methods. This book focuses on the determination and analysis of parameters in different models that are used in biochemistry, biophysics, and molecular biology. The Michaelis-Menten equation can explain the process to obtain the maximum amount of information by determining the parameters of the model. This text also explains the fundamentals present in hypothesis testing, and the equation that represents the statistical aspects of a linear model occurring frequently in this field of testing. This book also analyzes the ultraviolet spectra of nucleic acids, particularly, to establish the composition of melting regions of nucleic acids. The investigator can use the matrix rank analysis to determine the spectra to substantiate systems whose functions are not known. This text also explains flow techniques and relaxation methods associated with rapid reactions to determine transient kinetic parameters. This book is suitable for molecular biologists, biophysicists, physiologists, biochemists, bio- mathematicians, statisticians, computer programmers, and investigators involved in related sciences

Comprehensive Chemometrics

Comprehensive Chemometrics
Author:
Publisher: Elsevier
Total Pages: 2880
Release: 2009-03-09
Genre: Science
ISBN: 044452701X

Designed to serve as the first point of reference on the subject, Comprehensive Chemometrics presents an integrated summary of the present state of chemical and biochemical data analysis and manipulation. The work covers all major areas ranging from statistics to data acquisition, analysis, and applications. This major reference work provides broad-ranging, validated summaries of the major topics in chemometrics—with chapter introductions and advanced reviews for each area. The level of material is appropriate for graduate students as well as active researchers seeking a ready reference on obtaining and analyzing scientific data. Features the contributions of leading experts from 21 countries, under the guidance of the Editors-in-Chief and a team of specialist Section Editors: L. Buydens; D. Coomans; P. Van Espen; A. De Juan; J.H. Kalivas; B.K. Lavine; R. Leardi; R. Phan-Tan-Luu; L.A. Sarabia; and J. Trygg Examines the merits and limitations of each technique through practical examples and extensive visuals: 368 tables and more than 1,300 illustrations (750 in full color) Integrates coverage of chemical and biological methods, allowing readers to consider and test a range of techniques Consists of 2,200 pages and more than 90 review articles, making it the most comprehensive work of its kind Offers print and online purchase options, the latter of which delivers flexibility, accessibility, and usability through the search tools and other productivity-enhancing features of ScienceDirect

Analysis Of Biological Systems

Analysis Of Biological Systems
Author: Corrado Priami
Publisher: World Scientific
Total Pages: 431
Release: 2015-01-29
Genre: Science
ISBN: 1783266899

Modeling is fast becoming fundamental to understanding the processes that define biological systems. High-throughput technologies are producing increasing quantities of data that require an ever-expanding toolset for their effective analysis and interpretation. Analysis of high-throughput data in the context of a molecular interaction network is particularly informative as it has the potential to reveal the most relevant network modules with respect to a phenotype or biological process of interest.Analysis of Biological Systems collects classical material on analysis, modeling and simulation, thereby acting as a unique point of reference. The joint application of statistical techniques to extract knowledge from big data and map it into mechanistic models is a current challenge of the field, and the reader will learn how to build and use models even if they have no computing or math background. An in-depth analysis of the currently available technologies, and a comparison between them, is also included. Unlike other reference books, this in-depth analysis is extended even to the field of language-based modeling. The overall result is an indispensable, self-contained and systematic approach to a rapidly expanding field of science.